The Electronic Navigational Chart (ENC) consists of point, line, and area features compiled following the nodechain topological model. To ensure that the topological structure is valid, the International Hydrographic Organization (IHO) has developed a number of checks defined in Publication S-58. Many of the checks deal with the vertical component of the nautical chart with the aim to validate consistency among compiled geoobjects. Nevertheless, validation checks are not exhaustive and spatial relationships may be violated. The presented work identifies vertical discontinuities between depth areas and adjoining geo-objects in the ENC and following an iterative approach proposes fixes to the attributes and the geometry of the depth areas with errors.